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Consolidated Lead Optimization



Target disease: Chagas Disease
Target disease: Visceral Leishmaniasis
Target disease: Sleeping Sickness

Target disease: Chagas disease
Partners: Centre for Drug Candidate Optimisation (CDCO)/Monash University, Australia; Epichem, Australia; Murdoch University, Australia; Anacor, USA; Embedded Consulting, USA; Federal University of Ouro Preto, Brazil; Institute Pasteur Korea, South Korea
Management: Head of Chagas Discovery and Pre-clinical Programme, Eric Chatelain; Project Coordinator, Ivan Scandale
Project start: July 2008
Funding: Médecins Sans Frontières/Doctors without Borders, International; Spanish Agency for International Development Cooperation (AECID), Spain; Department for International Development (DFID), UK; GTZ on behalf of the Government of the Federal Republic of Germany, Germany; individual donors.
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Status:
In mid-2008, a Lead Optimization Consortium devoted to Chagas drug discovery was set up by DNDi. Members of this consortium are engaged in a complex, iterative process to optimize the efficacy and pharmacological properties of lead compounds while minimizing their toxicity. Rapid turnaround of compound assessment is achieved by a group of analytical and medicinal chemists (Epichem, Australia), pharmacologists (Monash University, Australia), and parasitologists (Murdoch University, Australia and Universidade Federal de Ouro Preto, Brazil). The objective is to develop at least one new optimized lead for Chagas disease by the first quarter of 2012 and to identify a new chemical series of interest.
One of the current chemistry efforts is on the fenarimol series. Several high-potency compounds have been generated, and some have shown efficacy in vivo.
At the same time, the team is evaluating the oxaboroles series, taking advantage of the compounds generated from the lead optimization programme for human African trypanosomiasis (HAT). Over 2,000 oxaboroles have been screened for their activity against T. cruzi in vitro, and some have shown activity. Other series originating from DNDi screening efforts will serve as leads for further optimization in the future.



Target disease: VL
Partners: Advinus Therapeutics, India; Central Drug Research Institute (CDRI), India
Management: Head of Visceral Leishmaniasis Discovery and Pre-clinical Programme, Denis Martin; Project Coordinator, Delphine Launay
Project start: November 2007
Funding: Bill & Melinda Gates foundation, USA; Médecins Sans Frontières/Doctors without Borders, International; Spanish Agency for International Development Cooperation (AECID), Spain; Department for International Development (DFID), UK; individual donors.


Status:
The goal of this project is to generate new drug candidates that meet the target product profile for the treatment of VL. DNDi partnered in 2007 with Advinus Therapeutics, a drug discovery and development company based in Bangalore, India, and CDRI (Central Drug Research Institute), an Indian public institution located in Lucknow, India.
Compounds showing activities (hits) are identified from DNDi’s ongoing screening projects carried out by our screening partners. The chemical structure of the best hits are then systematically modified, guided by a combination of medicinal chemistry, physicochemical properties, biological screening, and absorption, distribution, metabolism, excretion, and toxicology (ADMET) parameters, to ensure that the optimized compounds meet all the necessary drug-like criteria specified by the target product profile (TPP) for a new drug to treat VL. With a full team of eight chemists in place within the VL Lead Optimization Consortium, assessments of four series of synthetic compounds, provided by DNDi partners, have been carried out or are ongoing.
Recently, the thiazole series identified from a large screening campaign performed at Institut Pasteur Korea (IPK) has yielded potent lead molecules. Additional efficacy and pharmacokinetics studies are underway to identify pre-clinical candidates from this promising series.


Target disease: HAT
Partners: Scynexis, USA; Pace University, USA;
Management: Discovery & Preclinical Director, Robert Don; Project Coordinator, Ivan Scandale
Project start: April 2007
Funding: Bill & Melinda Gates foundation, USA; Médecins Sans Frontières/Doctors without Borders, International; Spanish Agency for International Development Cooperation (AECID), Spain; Department for International Development (DFID), UK; Ministry of Foreign and European Affairs (MAEE), France; individual donors.

Status: With the objective of developing optimized leads by progressing “hit” molecules with a good safety profile and activity against T. brucei parasites, this consortium brings together expertise in chemistry, biology, screening, and pre-formulation. Optimization efforts are focused on improving the molecule’s capacity to be absorbed into the bloodstream, to be distributed effectively to the infection sites, to survive in the body, to kill the parasite, and not to harm the patient. With two full lead optimization teams in place at Scynexis (a total of 18 scientists), a number of hits identified from DNDi screening partners are undergoing hit expansion. Scientists within the consortium use advanced techniques to study how the selected molecules interact with the therapeutic target (i.e. a protein or an enzyme, if known) and optimize the drug-like characteristics of these molecules to ensure that they comply with the target product profile (TPP).
This phase of discovery work requires a close, highly interactive collaboration between the biologists and chemists, who form a feedback loop: the biologists test the biological properties of compounds on biological systems, while the chemists perfect the chemical structure of these compounds based on information obtained by the biologists. Many compound series have been assessed. The current focus of the team is on the oxaborole series (see below).
The nitroimidazole class is another chemical series that is promising. One of the compounds in this class, fexinidazole, has been advanced into clinical development. DNDi’s strategy for the Lead Optimization Consortium is to develop a back-up compound in each of the oxaborole and nitroimidazole series. In case of failure of one of the current developed compounds, the back-up should be able to replace it rapidly.

 

Last update: December 2011




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