Consolidated Lead Optimization

Target disease: Chagas disease • Partners: Centre for
Drug Candidate Optimisation (CDCO)/Monash University, Australia;
Epichem, Australia; Murdoch University, Australia; Anacor, USA; Embedded Consulting, USA; Federal University of
Ouro Preto, Brazil; Institute Pasteur Korea, South Korea • Management: Head of Chagas Discovery and Pre-clinical Programme, Eric Chatelain; Project Coordinator, Ivan Scandale • Project start: July 2008 • Funding:
Médecins Sans Frontières/Doctors without Borders, International;
Spanish Agency for International Development Cooperation (AECID), Spain;
Department for International Development (DFID), UK; GTZ on behalf of
the Government of the Federal Republic of Germany, Germany; individual
donors.
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Status: In mid-2008, a Lead Optimization Consortium devoted to Chagas drug discovery was set up by DNDi.
Members of this consortium are engaged in a complex, iterative process
to optimize the efficacy and pharmacological properties of lead
compounds while minimizing their toxicity. Rapid turnaround of compound
assessment is achieved by a group of analytical and medicinal chemists
(Epichem, Australia), pharmacologists (Monash University, Australia),
and parasitologists (Murdoch University, Australia and Universidade
Federal de Ouro Preto, Brazil). The objective is to develop at least one
new optimized lead for Chagas disease by the first quarter of 2012 and
to identify a new chemical series of interest. One of the current
chemistry efforts is on the fenarimol series. Several high-potency
compounds have been generated, and some have shown efficacy in vivo. At
the same time, the team is evaluating the oxaboroles series, taking
advantage of the compounds generated from the lead optimization
programme for human African trypanosomiasis (HAT). Over 2,000 oxaboroles
have been screened for their activity against T. cruzi in vitro, and some have shown activity. Other series originating from DNDi screening efforts will serve as leads for further optimization in the future.
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Target disease: VL•
Partners: Advinus Therapeutics, India; Central Drug Research Institute (CDRI), India
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Management: Head of Visceral Leishmaniasis Discovery and Pre-clinical Programme, Denis Martin; Project Coordinator, Delphine Launay
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Project start: November 2007
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Funding:
Bill & Melinda Gates foundation, USA; Médecins Sans
Frontières/Doctors without Borders, International; Spanish Agency for
International Development Cooperation (AECID), Spain; Department for
International Development (DFID), UK; individual donors.
Status: The goal of this project is to generate new drug candidates that meet the target product profile for the treatment of VL. DNDi
partnered in 2007 with Advinus Therapeutics, a drug discovery and
development company based in Bangalore, India, and CDRI (Central Drug
Research Institute), an Indian public institution located in Lucknow,
India.
Compounds showing activities (hits) are identified from DNDi’s
ongoing screening projects carried out by our screening partners. The
chemical structure of the best hits are then systematically modified,
guided by a combination of medicinal chemistry, physicochemical
properties, biological screening, and absorption, distribution,
metabolism, excretion, and toxicology (ADMET) parameters, to ensure that
the optimized compounds meet all the necessary drug-like criteria
specified by the target product profile (TPP) for a new drug to treat
VL. With a full team of eight chemists in place within the VL Lead
Optimization Consortium, assessments of four series of synthetic
compounds, provided by DNDi partners, have been carried out or are ongoing.
Recently,
the thiazole series identified from a large screening campaign
performed at Institut Pasteur Korea (IPK) has yielded potent lead
molecules. Additional efficacy and pharmacokinetics studies are underway
to identify pre-clinical candidates from this promising series.
Target disease: HAT•
Partners: Scynexis, USA; Pace University, USA;
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Management: Discovery & Preclinical Director, Robert Don; Project Coordinator, Ivan Scandale
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Project start: April 2007
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Funding:
Bill & Melinda Gates foundation, USA; Médecins Sans
Frontières/Doctors without Borders, International; Spanish Agency for
International Development Cooperation (AECID), Spain; Department for
International Development (DFID), UK; Ministry of Foreign and European
Affairs (MAEE), France; individual donors.
Status:
With the objective of developing optimized leads by progressing “hit”
molecules with a good safety profile and activity against T. brucei parasites,
this consortium brings together expertise in chemistry, biology,
screening, and pre-formulation. Optimization efforts are focused on
improving the molecule’s capacity to be absorbed into the bloodstream,
to be distributed effectively to the infection sites, to survive in the
body, to kill the parasite, and not to harm the patient. With two full
lead optimization teams in place at Scynexis (a total of 18
scientists), a number of hits identified from DNDi screening
partners are undergoing hit expansion. Scientists within the consortium
use advanced techniques to study how the selected molecules interact
with the therapeutic target (i.e. a protein or an enzyme, if known) and
optimize the drug-like characteristics of these molecules to ensure
that they comply with the target product profile (TPP).
This phase
of discovery work requires a close, highly interactive collaboration
between the biologists and chemists, who form a feedback loop: the
biologists test the biological properties of compounds on biological
systems, while the chemists perfect the chemical structure of these
compounds based on information obtained by the biologists. Many compound
series have been assessed. The current focus of the team is on the
oxaborole series (see below).
The nitroimidazole class is another
chemical series that is promising. One of the compounds in this class,
fexinidazole, has been advanced into clinical development. DNDi’s
strategy for the Lead Optimization Consortium is to develop a back-up
compound in each of the oxaborole and nitroimidazole series. In case of
failure of one of the current developed compounds, the back-up should
be able to replace it rapidly.
Last update: December 2011